How to clean and join data from mothur with the dplyr R package (CC101)

May 7, 2021 • PD Schloss • 1 min read

Code

This is where we started before the episode

library(tidyverse)
library(readxl)

metadata <- read_excel("raw_data/schubert.metadata.xlsx")

otu_counts <- read_tsv("raw_data/schubert.subsample.shared")

taxonomy <- read_tsv("raw_data/schubert.cons.taxonomy")

Installations

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