An introduction to Snakemake tutorial for beginners (CC248)

September 15, 2022 • PD Schloss • 1 min read • •

Snakemake is a powerful tool for keeping track of data dependencies and to automate data analysis pipelines. In this episode of Code Club, Pat Shares how to install snakemake, convert a driver script to a simple Snakemake file, troubleshoot problems, create rules, use parameters, and test snakemake files. The overall goal of this project is to highlight reproducible research practices using a number of tools. The specific output from this project will be a map-based visual that shows the level of drought across the globe.

Code

You can browse the state of the repository at the

• beginning of the episode
• end of the episode